Development of thieno- and benzopyrimidinone inhibitors of the Hedgehog signaling pathway reveals PDE4-dependent and PDE4-independent mechanisms of action

Bioorg Med Chem Lett. 2016 Apr 15;26(8):1947-53. doi: 10.1016/j.bmcl.2016.03.013. Epub 2016 Mar 7.

Abstract

From a high content in vivo screen for modulators of developmental patterning in embryonic zebrafish, we previously identified eggmanone (EGM1, 3) as a Hedgehog (Hh) signaling inhibitor functioning downstream of Smoothened. Phenotypic optimization studies for in vitro probe development utilizing a Gli transcription-linked stable luciferase reporter cell line identified EGM1 analogs with improved potency and aqueous solubility. Mechanistic profiling of optimized analogs indicated two distinct scaffold clusters: PDE4 inhibitors able to inhibit downstream of Sufu, and PDE4-independent Hh inhibitors functioning between Smo and Sufu. Each class represents valuable in vitro probes for elucidating the complex mechanisms of Hh regulation.

Keywords: Eggmanone; Hedgehog signaling pathway; Phenotypic screening; Probe development; Suppressor of Fused.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cyclic Nucleotide Phosphodiesterases, Type 4 / metabolism*
  • Dose-Response Relationship, Drug
  • HEK293 Cells
  • Hedgehog Proteins / antagonists & inhibitors*
  • Humans
  • Molecular Structure
  • Phosphodiesterase 4 Inhibitors / chemical synthesis
  • Phosphodiesterase 4 Inhibitors / chemistry
  • Phosphodiesterase 4 Inhibitors / pharmacology*
  • Pyrimidinones / chemical synthesis
  • Pyrimidinones / chemistry
  • Pyrimidinones / pharmacology*
  • Repressor Proteins / antagonists & inhibitors
  • Repressor Proteins / deficiency
  • Signal Transduction / drug effects*
  • Smoothened Receptor / antagonists & inhibitors
  • Structure-Activity Relationship

Substances

  • Hedgehog Proteins
  • Phosphodiesterase 4 Inhibitors
  • Pyrimidinones
  • Repressor Proteins
  • SMO protein, human
  • SUFU protein, human
  • Smoothened Receptor
  • Cyclic Nucleotide Phosphodiesterases, Type 4